PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050871-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 697aa    MW: 76264.3 Da    PI: 7.9403
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050871-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.29e-32288413289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 
                       +g+kdrhsk+ T++g RdRRvRls+++a++f+dLqd+LGf ++sk+++WL+ +a  +i++l+ ++++ a +++a++  +  s++ss+      
  PSME_00050871-RA 288 TGGKDRHSKVLTAKGIRDRRVRLSVPTAIQFYDLQDRLGFEQPSKAVDWLIHNARSSIDKLPVLDAEMAASTSAGNVTQLISSNSSPvehcvs 380
                       689*************************************************************55555333333333333322222322222 PP

               TCP  89 ................................k 89 
                                                       +
  PSME_00050871-RA 381 spthsatadavsafrfgmgslesertssqkamN 413
                       222222222222222222222222222222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-30289415IPR005333Transcription factor, TCP
PROSITE profilePS5136930.54290348IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
YSGRLLSFND SIVIIEEWAR FVDPGLGPLA IAAAPNCSLK CNCKPGFEAL TEISKCAASR  60
YWKSDDSSGA EVRRCCDPSS SSAAGYHLAG DLAKCSNNDS GTLLGSALKA ISSTGPSIRC  120
EEQRPCLQDD HITATCGQNA PISVVQSLNS GITRPRSGRA SKTRNPTQKV SLGYKPYEPY  180
SMDDGSYPKI SNKRFQDLEA GYLRSKNGEP EVEIYSNGLA AFSDSMNESY LQEDNKSGRG  240
KHDNNEIKEN GKVSKRKAGE MERKALAVEL QSGNVDQKSR IVRISRLTGG KDRHSKVLTA  300
KGIRDRRVRL SVPTAIQFYD LQDRLGFEQP SKAVDWLIHN ARSSIDKLPV LDAEMAASTS  360
AGNVTQLISS NSSPVEHCVS SPTHSATADA VSAFRFGMGS LESERTSSQK AMNENPRSNI  420
VILKDLELVR TTSSISDGTI ERPVEHYTSN SSLTKPSSSR VQAIWKATER AKKKSTLAKI  480
SGRFASDIRQ LKSMQPSLTN PFHGVLPYTR VPLESQHIKD DNPCEIHSQI MMSGTSSVQP  540
LCDSNMPSYT GIVFTNQDSH PFQNMATLGS SAIHNCFPPV PSTSDSIYPI IGSYEMADSA  600
IPFSDPLESR HLGGNAAHTQ ANLFYSNIHM NIMKSVDEQQ QQQHIYKNFV STILPTYSND  660
INFSTSSFSR RVPFQSNSSA FITNMPNLED SEGCGLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-32TCP family protein